Antigen

Antigen Class

TFs and others

Antigen

su(Hw)

Cell type

Cell type Class

Cell line

Cell type

Kc167

Source

e/se

Developmental Stage

dorsal closure stage

Sample

source_name

Kc167_Su(Hw)_ChIP-seq

cell line

Kc167

chip antibody

Su(Hw) rabbit

chip antibody reference

PMID:19443682

input used

input-a

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069 ChIP was performed as in Matzat LH, Dale RK, Moshkovich N, Lei EP (2012) Tissue-specific regulation of chromatin insulator function. PLoS Genet 8: e1003069. “a” or “b” in filenames indicates which of 2 chromatin preps was used

Sequencing Platform

instrument_model

Illumina HiSeq 2000

dm6

Number of total reads

14973157

Reads aligned (%)

75.8

Duplicates removed (%)

37.5

Number of peaks

5401 (qval < 1E-05)

dm3

Number of total reads

14973157

Reads aligned (%)

76.1

Duplicates removed (%)

34.2

Number of peaks

5400 (qval < 1E-05)